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I have seen the Cyclone III datasheet and it claims DDR and DDR2 compatible PHY. But was looking some good LPDDR chips for my design. Could I use the PHY inside of Cyclone III with LPDDR ic? Do you know other FPGA compatible with LPDDR?

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To the best of my knowledge, Cyclone III will support LPDDR and LPDDR2, but you really should talk to an Altera applications engineer to be sure. – Dave Tweed Sep 15 '12 at 15:50

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No LPDDR is not supported by Cyclone III. Neither LPDDR2. Afaik Xilinx introduced LPDDR support since Spartan-3

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