What specifically are the fuses intended to protect? – Andy aka
I'm no expert, but I would have though that it would be to protect the
transformer's primary windings (in the event of an internal short)
No, you should be trying to protect the infra-structure wiring that feeds the transformer in case the transformer fails short circuit and melts the infra-structure wiring causing a fire and lots of damage, cost and risk. You can use a slow blow fuse.
So, you need to understand what the building/site wiring is rated at and choose a fuse of suitable value. You can't protect the transformer against itself failing - if it fails it's trash and no amount of fusing is going to make it anything less than trash.
And, by the same token, the transformer and wiring to the motors are the "new" infra-structure that need to be protected from the motors going short circuit and drawing too much current. If you deem the transformer to be the weak link in that new infra-structure then you could use a thermal fuse that blows when the transformer gets too warm or just a regular slow blow fuse.
In all situations of using a fuse, the fuse is to protect infra-structure.