I have DIY sam3x8e pcb board based on schematics of Arduino Due. I can program it with Atmel-Ice (jtag connector) in Atmel Studio with basic serial transfer example and it works fine when the Atmel-ice is plugged in to the board. But when I unplugged it, the MCU doesn`t work. What are possible reasons for that?
I tested all the voltages across Sam3x8e power pins and they are all correct.