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I was just wondering if there's any way for me to write VHDL code, that I can then upload to the Mojo V3 board?

The Mojo V3 IDE is Verilog/Lucid friendly, both languages that I'm unfamiliar with.

Thanks in advance.

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Use Xilinx ISE to build a design for the part, then use Mojo Loader to load the bitstream into the board's flash memory. (Due to some unfortunate design decisions on the part of Embedded Micro / Alchitry, there is no way to load a design directly onto the FPGA using the Mojo's USB interface.)

If you aren't familiar with using Xilinx ISE, here is a brief tutorial on using it with this board.

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