The easiest and cheapest (AFAIK) is to use a capacitive divider.
The Capacitive Divider Schematic Test Fixture
simulate this circuit – Schematic created using CircuitLab
The principle is to use a known (and hopefully precise) series capacitor C1 to perform voltage division with (See schematic below).
Feed a signal that will make the impedance \$Z_{C_1} + Z_{C_{test}}||Z_{C_{probe}}\$ much larger compared to the 50 ohm termination "Rterm" from your signal generator, such that the signal amplitude you see set in your generator is what you're actually feeding as an input (and not something attenuated).
For this particular test, 100kHz should be good enough.
Before doing anything, you need to know your probe's input capacitance. You can probably find it in the datasheet.
But in case you want to measure it, you can simply use the same capacitive divider test fixture; remove Ctest from the schematic shown below and measure with your probe.
The measurement you see in your oscilloscope or spectrum analyzer will already be considering the probe's capacitance, so you can know its value from the following equation
$$
\frac{V_{measpoint}}{V_1} = \frac{C_1}{C_1 + C_{probe}}
$$
Solve for \$C_{probe}\$ in this equation (since all other variables are known) and you're done.
Now, you're ready to measure your unknown capacitance.
$$
\frac{V_{measpoint}}{V_1} = \frac{C_1}{C_1 + C_{probe} + C_{test}}
$$
Simply solve for \$C_{test}\$ and you're done with your measurement.