When I use a USB Serial Programmer, the 3.3V line from the programmer gets connected to the 3.3V line from the circuit below.
The problem is that I also get 3.3v on the voltage regulator's VIn, supplying power to my other components hooked to the 5v net (not shown on the schematic). Could I use a Schottky diode in serial either in Vo->3V3 or 5v->Vin in order to prevent this? I think it might be better to use it on the input side of the voltage regulator since the voltage drop (0.3V) is less significant but then the voltage regulator will still be "on"