I think it is mathematically not correct to say \$j = \sqrt{-1}\$. It is correct to say \$j^2 = -1\$. That is all you need in these calculations. Reason: taking a complex root is multiple valued, but squaring is undoubtful clear. So avoid taking a root if you can do it with squaring.
And yes, I do certainly prefer to consider the reactance of a capacitor \$ C \$ to be negative to express the phase difference between current and voltage, compared to the same things in/on a inductor.
In my opinion it is even better to distinguise between the magnitude and the value of a reactance: use the caret symbol to differentiate between the two, like we already do for a voltage or current: \$ V \$ and \$ \hat V \$ and \$ i \$ and \$ \hat i \$. It is hard to see these special characters in plain text mode, but with this special mathematics friendly format it really looks nice.
I suggest we do the same with the \$ X \$, so for a capacitor \$ C \$ define \$X = -\frac{1}{\omega C}\$ and \$|X| = \hat X = \frac{1}{\omega C}\$ and from now on when you want to address the magnitude of the reactance, use \$ \hat X \$. Problem solved.
And talking about reactance means we should also talk about susceptance, which is not the invers of reactance but the imaginairy part of the admittance.
Example: if complex "impedance" \$Z = R + jX\$ with real \$ R \$ = "resistance" and real X = "reactance", then the complex "admittance" \$ W \$ defined as \$ W = 1/Z \$ can be again written as \$ W = G + jY \$ , with real \$ G \$ = "conductance" and real \$ Y \$ = "susceptance". Note that in these definitions the \$ R, X, G \$ and \$ Y \$ are all real numbers and may carry a sign, even \$ R \$ and \$ G \$ in general.
Working this out gives:
$$ \begin{align}
W & = \frac {1}{Z} \\
& = \frac {1}{R+jX} \\
& = \frac {1}{R+jX} \cdot \frac {R-jX}{R-jX} \\
& = \frac {R-jX}{R^2+X^2} \\
& = \frac{R}{(R^2+X^2)} + j \cdot \frac{-X}{R^2+X^2} \\
& = G+jY
\end {align}
$$
or the imaginary part (the "susceptance") of \$ W \$ is:
$$ Y = - \frac{X}{R^2+X^2} $$
Note that susceptance \$ Y \$ obviously will have a positive value if reactance \$ X<0 \$ .
A special case is the capacitor \$ C \$ of which the resistance \$ R=0 \Omega \$ and rectance \$ X=- \frac{1}{\omega C} \Omega\$ . Note the negative sign: this carries information about the phase difference between voltage over and current through the \$ C \$ .
Filling in these values gives:
$$ Y = - \left( \frac{-\frac{1}{\omega C}}{0^2 + \left( - \frac{1}{\omega C} \right) ^2} \right) = \frac{ \frac{1}{ \omega C}}{ \left( \frac{1}{ \omega C} \right) ^2} = \omega C $$
which, as was expected, is a positive number: \$ Y > 0 \$
Note, that for a capacitor \$ C \$ the reactance \$ X = - \frac {1}{Y} \$ , where \$ Y \$ = the susceptance of the \$ C \$ .
Note also, that the change in sign means the phase has flipped too and that is as it should be: because on a capacitor its voltage over it is 90 degrees lagging behind the current through it.
If you look at the reactance ("AC-resistance") of a capacitor) \$ \frac {V_C}{I_C} = Z_C \$ you should get a negative sign reflecting that the voltage is lagging relative to the current and that makes that the reactance \$ X \$ of a capacitor \$ C \$ should have a negative sign.
Looking at \$ \frac {I_C}{V_C} = Y_C \$, you are looking at the current relative to the voltage and because the current is 90 degrees ahead of the voltage, the susceptance ("AC-conductance") of the capacitor \$ Y_C \$ should be positive.