After placing my components I re-annotated from the PCB to get positional annotation. This worked fine. But I've just noticed that components on my PCB and schematic (whilst linked, i.e I can click on the component on PCB and it will highlight it on schematic) do not have the same designators! R39 on schematic is linked to R40 on the pcb!
I tried doing an update schematic from PCB but it isn't picking up any changes?
How do i fix this??